Since Zenphoto is file system based you can upload (using FTP) your entire directory/folder structure into the `albums` folder of your installation. Every directory/folder will be an "album" (as it's called in Zenphoto)
I'm assuming that will create a copy of everything I upload into ZenPhoto's private repository / folder - I'm looking to point it to an existing folder structure local to the system with ZenPhoto installed.
Well, if you copy it to the `/album`folder that will copy it. But you can set another folder (or rename it) within the config file in `/zp-data/zenphoto.cfg.php`. It must be on the same server though and if you choose to put it outside the webroot some multimedia files especially if in Flash mode will not work.
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Every directory/folder will be an "album" (as it's called in Zenphoto)