How hard would it be to open the larger images up into a full-screen lightbox type image instead of how they open now..?
shouldn't be too hard, take a look at the theming tutorial and function reference guide, and then change the references you need to use the lightbox script.
Theming Tutorial
http://www.zenphoto.org/category/user-guide/theming-templating/
Function Guide
http://www.zenphoto.org/documentation/index.html