My site was taken over too, which unfortunately spilled into a second site that I run within the same hosting account. Very important to replace / clean *every* php file on the system, and look at *every* .htaccess file, even any that are outside of the webserver's DocumentRoot.
Filipe - it's disappointing, but you run this risk with any php based software that accepts a user input. Whether you wrote it yourself or got it from places like zenphoto.
However, a more pro-active alert would have been good. I only upgraded to 1.4.1.4 a couple of weeks back, so wasn't checking this site looking for new updates. Each forum member has registered with an email address, how about a bulk email alert?